Here’s an interesting situation, courtesy of Retraction Watch – trying to pull back a paper because it disclosed something that was supposed to be the subject of your patent. Say the authors of the paper in the Korean Journal of Physiology and Pharmacology:
We regret to inform that the published paper included a few parts that disclosed confidential information which should have been protected under patent law. We admit that the request for retraction is due to the indiscretion of the authors, and confirmed that editorial committee of KJPP have not conducted any fault in publishing the paper.
I would think that if you’ve disclosed, you’ve disclosed, so this will all come down to timing. Shouldn’t matter much whether the paper has been retracted or not. . .